Sequence Similarity Clusters for the Entities in PDB 1C40

Entity #1 | Chains: A
PROTEIN (HEMOGLOBIN (ALPHA CHAIN)) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63790
95 % 3 5 7698
90 % 3 11 2806
70 % 217 321 18
50 % 512 730 5
40 % 517 735 9
30 % 936 1175 8
Entity #2 | Chains: B
PROTEIN (HEMOGLOBIN (BETA CHAIN)) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13114
95 % 4 12 2266 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 17 1608
70 % 233 335 14
50 % 513 730 5
40 % 518 735 9
30 % 937 1175 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.