Sequence Similarity Clusters for the Entities in PDB 1C40

Entity #1 | Chains: A
PROTEIN (HEMOGLOBIN (ALPHA CHAIN)) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65695
95 % 3 5 7954 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 11 2897
70 % 218 327 15
50 % 516 744 4
40 % 521 749 8
30 % 949 1198 8
Entity #2 | Chains: B
PROTEIN (HEMOGLOBIN (BETA CHAIN)) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13561
95 % 4 12 2345 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 17 1662
70 % 234 341 12
50 % 517 744 4
40 % 522 749 8
30 % 950 1198 8

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.