Sequence Similarity Clusters for the Entities in PDB 1C40

Entity #1 | Chains: A
PROTEIN (HEMOGLOBIN (ALPHA CHAIN)) protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 13813
95 % 3 5 7863 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 3 11 2928
70 % 222 332 17
50 % 524 754 4
40 % 529 759 7
30 % 992 1293 6
Entity #2 | Chains: B
PROTEIN (HEMOGLOBIN (BETA CHAIN)) protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 3620
95 % 4 12 2430 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 17 1700
70 % 238 346 14
50 % 525 754 4
40 % 530 759 7
30 % 993 1293 6

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures