Sequence Similarity Clusters for the Entities in PDB 1C1Y

Entity #1 | Chains: A
RAS-RELATED PROTEIN RAP-1A protein, length: 167 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 18 1961
95 % 10 21 1890 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 2.0
PDBFlex
90 % 10 21 1930
70 % 10 21 1950
50 % 176 294 99
40 % 253 492 23
30 % 358 837 14
Entity #2 | Chains: B
PROTO-ONCOGENE SERINE/THREONINE PROTEIN KINASE RAF-1 protein, length: 77 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 24556
95 % 2 7 11461 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.8
PDBFlex
90 % 2 7 11305
70 % 2 7 10679
50 % 2 8 8628
40 % 2 8 7848
30 % 2 8 6807

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures