Sequence Similarity Clusters for the Entities in PDB 1C1W

Entity #1 | Chains: L
Thrombin light chain protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 163 338 45
95 % 163 339 62 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 163 339 66
70 % 163 341 78
50 % 163 341 107
40 % 163 341 130
30 % 163 341 137
Entity #2 | Chains: H
Thrombin heavy chain protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 140 290 58
95 % 178 377 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 179 384 39
70 % 179 408 46
50 % 179 408 84
40 % 1004 1719 4
30 % 1074 1869 6
Entity #3 | Chains: I
Hirudin-2 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures