Sequence Similarity Clusters for the Entities in PDB 1C1U

Entity #1 | Chains: L
ALPHA THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 119 334 53
95 % 121 342 67 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 121 342 71
70 % 121 342 85
50 % 121 342 115
40 % 121 342 138
30 % 121 342 147
Entity #2 | Chains: H
ALPHA THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 116 332 54
95 % 125 378 55 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 125 385 57
70 % 125 409 48
50 % 125 409 87
40 % 840 1895 4
30 % 844 1909 6
Entity #3 | Chains: I
ACETYL HIRUDIN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures