Sequence Similarity Clusters for the Entities in PDB 1C1U

Entity #1 | Chains: L
ALPHA THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 119 335 54
95 % 121 343 69 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 121 343 74
70 % 121 343 89
50 % 121 343 118
40 % 121 343 140
30 % 121 343 151
Entity #2 | Chains: H
ALPHA THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 116 333 55
95 % 125 379 58 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 125 386 59
70 % 125 410 52
50 % 125 410 93
40 % 840 1898 4
30 % 844 1912 7
Entity #3 | Chains: I
ACETYL HIRUDIN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures