Sequence Similarity Clusters for the Entities in PDB 1C1U

Entity #1 | Chains: L
ALPHA THROMBIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 120 336 56
95 % 122 344 71 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 122 344 77
70 % 122 344 91
50 % 122 344 124
40 % 122 344 144
30 % 122 344 156
Entity #2 | Chains: H
ALPHA THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 117 334 57
95 % 126 380 58 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 126 387 61
70 % 126 411 61
50 % 126 411 95
40 % 849 1912 4
30 % 853 1926 7
Entity #3 | Chains: I
ACETYL HIRUDIN protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures