Sequence Similarity Clusters for the Entities in PDB 1C1J

Entity #1 | Chains: A,B,C,D
BASIC PHOSPHOLIPASE A2 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24008
95 % 4 4 5026 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 5041
70 % 4 4 4916
50 % 171 181 146
40 % 286 307 100
30 % 286 307 112

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures