Sequence Similarity Clusters for the Entities in PDB 1C1E

Entity #1 | Chains: L
CATALYTIC ANTIBODY 1E9 (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59130
95 % 54 145 147 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 58 155 149
70 % 631 2264 1
50 % 1294 4587 1
40 % 1294 4587 1
30 % 1442 5392 1
Entity #2 | Chains: H
CATALYTIC ANTIBODY 1E9 (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 58804
95 % 1 1 41301
90 % 1 1 39397
70 % 624 2222 2
50 % 1295 4587 1
40 % 1295 4587 1
30 % 1443 5392 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.