Sequence Similarity Clusters for the Entities in PDB 1C1E

Entity #1 | Chains: L
CATALYTIC ANTIBODY 1E9 (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 54559
95 % 52 147 153 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 58 162 146
70 % 714 2519 1
50 % 1464 5107 1
40 % 1717 5756 1
30 % 2102 7175 1
Entity #2 | Chains: H
CATALYTIC ANTIBODY 1E9 (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55133
95 % 1 1 45282
90 % 1 1 43079
70 % 707 2478 2
50 % 1465 5107 1
40 % 1718 5756 1
30 % 2103 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures