Sequence Similarity Clusters for the Entities in PDB 1C16

Entity #1 | Chains: A,C,E,G
MHC-LIKE PROTEIN T22 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13029
95 % 1 2 12567 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.5
PDBFlex
90 % 2 3 7198
70 % 2 3 7003
50 % 728 737 7
40 % 777 788 10
30 % 905 919 15
Entity #2 | Chains: B,D,F,H
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 617 632 2
95 % 660 676 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 669 685 4
70 % 919 936 4
50 % 940 958 3
40 % 940 958 7
30 % 940 958 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures