Sequence Similarity Clusters for the Entities in PDB 1C16

Entity #1 | Chains: A,C,E,G
MHC-LIKE PROTEIN T22 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12834
95 % 1 2 12385 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.5
PDBFlex
90 % 2 3 7097
70 % 2 3 6909
50 % 723 732 6
40 % 772 783 10
30 % 895 909 15
Entity #2 | Chains: B,D,F,H
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 609 624 2
95 % 652 668 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 661 677 4
70 % 907 924 4
50 % 928 946 3
40 % 928 946 7
30 % 928 946 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures