Sequence Similarity Clusters for the Entities in PDB 1C16

Entity #1 | Chains: A,C,E,G
MHC-LIKE PROTEIN T22 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 13707
95 % 1 2 12948 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.4
PDBFlex
90 % 2 3 7358
70 % 2 3 7158
50 % 751 760 7
40 % 801 812 9
30 % 925 939 13
Entity #2 | Chains: B,D,F,H
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 660 675 2
95 % 674 690 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 683 699 4
70 % 936 953 4
50 % 957 975 3
40 % 957 975 6
30 % 957 975 9

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures