Sequence Similarity Clusters for the Entities in PDB 1C16

Entity #1 | Chains: A,C,E,G
MHC-LIKE PROTEIN T22 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12547
95 % 1 2 12136 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.5
PDBFlex
90 % 2 3 6947
70 % 2 3 6774
50 % 712 721 6
40 % 761 772 10
30 % 882 896 15
Entity #2 | Chains: B,D,F,H
PROTEIN (BETA-2-MICROGLOBULIN) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 602 616 2
95 % 645 660 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 1.0
PDBFlex
90 % 654 669 4
70 % 896 912 4
50 % 917 934 3
40 % 917 934 7
30 % 917 934 12

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.