Sequence Similarity Clusters for the Entities in PDB 1C12

Entity #1 | Chains: A
PROTEIN (ANTIBODY FRAGMENT FAB) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 62647
95 % 19 29 1195 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 0.8
PDBFlex
90 % 20 31 1150
70 % 1379 2474 1
50 % 2814 5011 1
40 % 2814 5011 1
30 % 3262 5941 1
Entity #2 | Chains: B
PROTEIN (ANTIBODY FRAGMENT FAB) protein, length: 220 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 61932
95 % 1 1 43478
90 % 1 1 41392
70 % 1364 2424 2
50 % 2815 5011 1
40 % 2815 5011 1
30 % 3263 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures