Sequence Similarity Clusters for the Entities in PDB 1C0W

Entity #1 | Chains: E
DNA (5'-D(P*AP*TP*TP*AP*GP*GP*TP*TP*AP*GP*CP*CP*TP*AP*CP*CP*CP*TP*AP*AP*T)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
DNA (5'-D(P*AP*TP*TP*AP*GP*GP*TP*TP*AP*GP*GP*CP*TP*AP*CP*CP*CP*TP*AP*AP*T)-3') dna, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B,C,D
DIPHTHERIA TOXIN REPRESSOR protein, length: 225 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23482
95 % 19 19 2098 Flexibility: Medium
Max RMSD: 17.8, Avg RMSD: 4.9
PDBFlex
90 % 19 19 2154
70 % 19 19 2160
50 % 21 21 1459
40 % 21 21 1449
30 % 21 21 1439

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures