Sequence Similarity Clusters for the Entities in PDB 1C0M

Entity #1 | Chains: A,B,C,D
PROTEIN (INTEGRASE) protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 12781
95 % 2 3 9242 Flexibility: Medium
Max RMSD: 14.4, Avg RMSD: 8.5
PDBFlex
90 % 2 3 9146
70 % 2 3 8768
50 % 2 3 7941
40 % 2 3 7300
30 % 2 3 6437

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures