Sequence Similarity Clusters for the Entities in PDB 1C08

Entity #1 | Chains: A
ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 14 3526
95 % 20 22 2188 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 20 22 2256
70 % 115 183 74
50 % 179 296 22
40 % 503 866 5
30 % 565 992 7
Entity #2 | Chains: B
ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10) protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 3903
95 % 20 22 2186 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 20 22 2254
70 % 27 39 1059
50 % 301 525 8
40 % 504 866 5
30 % 566 992 7
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 575 640 3
95 % 626 693 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 640 710 5
70 % 851 927 7
50 % 857 935 7
40 % 887 969 11
30 % 887 969 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.