Sequence Similarity Clusters for the Entities in PDB 1C08

Entity #1 | Chains: A
ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 21 2158
95 % 20 22 2403 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 20 24 2279
70 % 127 215 66
50 % 186 319 21
40 % 210 363 27
30 % 3549 7269 1
Entity #2 | Chains: B
ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10) protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 17 2916
95 % 20 22 2371 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 20 22 2439
70 % 47 76 543
50 % 352 613 6
40 % 2894 5834 1
30 % 3550 7269 1
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 647 717 3
95 % 664 734 3 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 678 751 5
70 % 894 974 7
50 % 900 982 8
40 % 931 1017 10
30 % 931 1017 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures