Sequence Similarity Clusters for the Entities in PDB 1C08

Entity #1 | Chains: A
ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 14 3720
95 % 20 22 2283 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 20 22 2346
70 % 115 191 72
50 % 183 308 21
40 % 539 929 5
30 % 602 1056 7
Entity #2 | Chains: B
ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10) protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 4117
95 % 20 22 2281 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 20 22 2344
70 % 27 39 1102
50 % 333 576 7
40 % 540 929 5
30 % 603 1056 7
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 593 660 3
95 % 644 713 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 658 730 5
70 % 872 950 7
50 % 878 958 8
40 % 908 992 11
30 % 908 992 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.