Sequence Similarity Clusters for the Entities in PDB 1C08

Entity #1 | Chains: A
ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 21 2077
95 % 20 22 2327 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 20 22 2398
70 % 126 211 55
50 % 183 308 24
40 % 207 352 27
30 % 3322 6818 1
Entity #2 | Chains: B
ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10) protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 17 2831
95 % 20 22 2277 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 20 22 2342
70 % 27 39 1107
50 % 336 583 7
40 % 2721 5475 1
30 % 3323 6818 1
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 638 707 3
95 % 650 719 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 664 736 5
70 % 878 956 7
50 % 884 964 8
40 % 914 998 10
30 % 914 998 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures