Sequence Similarity Clusters for the Entities in PDB 1C08

Entity #1 | Chains: A
ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10) protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 14 3885
95 % 20 22 2395 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 20 24 2274
70 % 115 193 75
50 % 183 312 23
40 % 549 956 5
30 % 613 1085 7
Entity #2 | Chains: B
ANTI-HEN EGG WHITE LYSOZYME ANTIBODY (HYHEL-10) protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 11 4299
95 % 20 22 2393 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.4
PDBFlex
90 % 20 22 2460
70 % 47 76 538
50 % 343 599 6
40 % 550 956 5
30 % 614 1085 7
Entity #3 | Chains: C
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 600 668 3
95 % 651 721 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 665 738 5
70 % 881 961 7
50 % 887 969 8
40 % 917 1003 11
30 % 917 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures