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IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
Sequence Clustering and Redundancy Reduction Results
1C04
Sequence Clusters for the Sequence Entities in PDB 1C04
Entity #1: Chains: E - 23S RRNA FRAGMENT rna, length: 58 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - 23S RRNA FRAGMENT rna, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 18226
95% 3 3 15803
90% 3 3 15420
70% 3 3 14346
50% 3 3 12566
40% 3 3 11259
30% 3 3 9688
Entity #4: Chains: B - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 10 5029
95% 10 10 5645
90% 10 10 5638
70% 13 13 4019
50% 148 148 125
40% 232 232 68
30% 355 355 49
Entity #5: Chains: C - RIBOSOMAL PROTEIN L11 protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 23738
95% 2 2 19777
90% 2 2 19197
70% 2 2 17654
50% 2 2 15464
40% 5 5 8185
30% 5 5 7195
Entity #6: Chains: D - RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 9 5725
95% 9 9 6312
90% 9 9 6282
70% 12 12 4727
50% 236 236 51
40% 237 237 64
30% 360 360 44
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.