Sequence Similarity Clusters for the Entities in PDB 1C04

Entity #1 | Chains: E
23S RRNA FRAGMENT rna, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
23S RRNA FRAGMENT rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 20659
95 % 3 3 17798
90 % 3 3 17333
70 % 3 3 16056
50 % 3 3 14019
40 % 3 3 12503
30 % 3 3 10721
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 5767
95 % 10 10 6354
90 % 10 10 6335
70 % 13 13 4524
50 % 185 185 115
40 % 299 299 58
30 % 445 445 37
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L11 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26877
95 % 2 2 22257
90 % 2 2 21565
70 % 2 2 19752
50 % 2 2 17204
40 % 5 5 9155
30 % 5 5 8009
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 6557
95 % 9 9 7126
90 % 9 9 7094
70 % 16 16 3744
50 % 303 303 42
40 % 304 304 54
30 % 450 450 34

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.