Sequence Similarity Clusters for the Entities in PDB 1C04

Entity #1 | Chains: E
23S RRNA FRAGMENT rna, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
23S RRNA FRAGMENT rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 19816
95 % 3 3 17134
90 % 3 3 16690
70 % 3 3 15458
50 % 3 3 13521
40 % 3 3 12089
30 % 3 3 10390
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 5508
95 % 10 10 6105
90 % 10 10 6088
70 % 13 13 4350
50 % 177 177 115
40 % 274 274 58
30 % 412 412 42
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L11 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 25807
95 % 2 2 21438
90 % 2 2 20781
70 % 2 2 19026
50 % 2 2 16600
40 % 5 5 8805
30 % 5 5 7727
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 6270
95 % 9 9 6827
90 % 9 9 6792
70 % 16 16 3611
50 % 278 278 45
40 % 279 279 55
30 % 417 417 38

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.