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IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
Sequence Clustering and Redundancy Reduction Results
1C04
Sequence Clusters for the Sequence Entities in PDB 1C04
Entity #1: Chains: E - 23S RRNA FRAGMENT rna, length: 58 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - 23S RRNA FRAGMENT rna, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 17904
95% 3 3 15548
90% 3 3 15163
70% 3 3 14094
50% 3 3 12348
40% 3 3 11065
30% 3 3 9528
Entity #4: Chains: B - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 10 4936
95% 10 10 5548
90% 10 10 5553
70% 12 12 4520
50% 126 126 144
40% 208 208 81
30% 328 328 51
Entity #5: Chains: C - RIBOSOMAL PROTEIN L11 protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 23273
95% 2 2 19401
90% 2 2 18827
70% 2 2 17337
50% 2 2 15211
40% 5 5 8066
30% 5 5 7098
Entity #6: Chains: D - RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 9 5608
95% 9 9 6198
90% 9 9 6174
70% 11 11 4945
50% 212 212 59
40% 213 213 73
30% 333 333 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.