Sequence Similarity Clusters for the Entities in PDB 1C04

Entity #1 | Chains: E
23S RRNA FRAGMENT rna, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
23S RRNA FRAGMENT rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 20104
95 % 3 3 17373
90 % 3 3 16916
70 % 3 3 15673
50 % 3 3 13700
40 % 3 3 12244
30 % 3 3 10505
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 5592
95 % 10 10 6187
90 % 10 10 6169
70 % 13 13 4412
50 % 184 184 113
40 % 282 282 59
30 % 426 426 37
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L11 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 26154
95 % 2 2 21711
90 % 2 2 21035
70 % 2 2 19262
50 % 2 2 16800
40 % 5 5 8944
30 % 5 5 7835
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 6354
95 % 9 9 6925
90 % 9 9 6889
70 % 16 16 3662
50 % 286 286 46
40 % 287 287 56
30 % 431 431 32

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.