Sequence Similarity Clusters for the Entities in PDB 1C04

Entity #1 | Chains: E
23S RRNA FRAGMENT rna, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
23S RRNA FRAGMENT rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23926
95 % 3 3 20494 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.7
PDBFlex
90 % 3 3 19917
70 % 3 3 18340
50 % 3 3 15902
40 % 3 3 14142
30 % 3 3 12093
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 6794
95 % 10 10 7412
90 % 10 10 7380
70 % 14 14 4927
50 % 228 228 112
40 % 372 372 61
30 % 570 570 38
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L11 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 30955
95 % 2 2 25617 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 2 2 24760
70 % 2 2 22485
50 % 2 2 19440
40 % 5 5 10387
30 % 5 5 9052
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 7712
95 % 9 9 8278
90 % 9 9 8218
70 % 225 225 83
50 % 379 379 43
40 % 580 580 20
30 % 580 580 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures