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IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
Sequence Clustering and Redundancy Reduction Results
1C04
Sequence Clusters for the Sequence Entities in PDB 1C04
Entity #1: Chains: E - 23S RRNA FRAGMENT rna, length: 58 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - 23S RRNA FRAGMENT rna, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 17261
95% 3 3 15068
90% 3 3 14704
70% 3 3 13661
50% 3 3 11978
40% 3 3 10731
30% 3 3 9263
Entity #4: Chains: B - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 10 4716
95% 10 10 5309
90% 10 10 5322
70% 12 12 4331
50% 196 196 140
40% 310 310 80
30% 449 449 51
Entity #5: Chains: C - RIBOSOMAL PROTEIN L11 protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22490
95% 2 2 18823
90% 2 2 18277
70% 2 2 16812
50% 2 2 14767
40% 5 5 7829
30% 5 5 6912
Entity #6: Chains: D - RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 9 5370
95% 9 9 5980
90% 9 9 5961
70% 11 11 4736
50% 314 314 57
40% 315 315 76
30% 454 454 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.