Sequence Similarity Clusters for the Entities in PDB 1C04

Entity #1 | Chains: E
23S RRNA FRAGMENT rna, length: 58 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: F
23S RRNA FRAGMENT rna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
RIBOSOMAL PROTEIN L2 protein, length: 137 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 22720
95 % 3 3 19545
90 % 3 3 19012
70 % 3 3 17520
50 % 3 3 15231
40 % 3 3 13568
30 % 3 3 11601
Entity #4 | Chains: B
RIBOSOMAL PROTEIN L6 protein, length: 177 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 10 6454
95 % 10 10 7055
90 % 10 10 7024
70 % 14 14 4662
50 % 209 209 113
40 % 348 348 70
30 % 530 530 35
Entity #5 | Chains: C
RIBOSOMAL PROTEIN L11 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 29499
95 % 2 2 24461
90 % 2 2 23680
70 % 2 2 21581
50 % 2 2 18702
40 % 5 5 9954
30 % 5 5 8668
Entity #6 | Chains: D
RIBOSOMAL PROTEIN L14 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 7309
95 % 9 9 7876
90 % 9 9 7829
70 % 207 207 84
50 % 355 355 54
40 % 539 539 20
30 % 539 539 33

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.