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IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
Sequence Clustering and Redundancy Reduction Results
1C04
Sequence Clusters for the Sequence Entities in PDB 1C04
Entity #1: Chains: E - 23S RRNA FRAGMENT rna, length: 58 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - 23S RRNA FRAGMENT rna, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 16961
95% 3 3 14821
90% 3 3 14465
70% 3 3 13452
50% 3 3 11792
40% 3 3 10563
30% 3 3 9131
Entity #4: Chains: B - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 10 4611
95% 10 10 5198
90% 10 10 5210
70% 12 12 4235
50% 183 183 147
40% 292 292 85
30% 397 397 61
Entity #5: Chains: C - RIBOSOMAL PROTEIN L11 protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 22099
95% 2 2 18503
90% 2 2 17973
70% 2 2 16532
50% 2 2 14522
40% 5 5 7707
30% 5 5 6819
Entity #6: Chains: D - RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 9 5260
95% 9 9 5866
90% 9 9 5845
70% 11 11 4644
50% 296 296 62
40% 297 297 81
30% 402 402 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.