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IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI
Sequence Clustering and Redundancy Reduction Results
1C04
Sequence Clusters for the Sequence Entities in PDB 1C04
Entity #1: Chains: E - 23S RRNA FRAGMENT rna, length: 58 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: F - 23S RRNA FRAGMENT rna, length: 29 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: A - RIBOSOMAL PROTEIN L2 protein, length: 137 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 18366
95% 3 3 15934
90% 3 3 15540
70% 3 3 14450
50% 3 3 12659
40% 3 3 11347
30% 3 3 9761
Entity #4: Chains: B - RIBOSOMAL PROTEIN L6 protein, length: 177 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 10 5067
95% 10 10 5681
90% 10 10 5671
70% 13 13 4043
50% 148 148 128
40% 232 232 69
30% 355 355 49
Entity #5: Chains: C - RIBOSOMAL PROTEIN L11 protein, length: 67 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 2 23886
95% 2 2 19909
90% 2 2 19317
70% 2 2 17757
50% 2 2 15552
40% 5 5 8238
30% 5 5 7241
Entity #6: Chains: D - RIBOSOMAL PROTEIN L14 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 9 5771
95% 9 9 6352
90% 9 9 6321
70% 12 12 4753
50% 236 236 52
40% 237 237 65
30% 360 360 45
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.