Sequence Similarity Clusters for the Entities in PDB 1BZ9

Entity #1 | Chains: A
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 59 63 200
95 % 63 67 252 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 65 69 265
70 % 700 727 6
50 % 702 732 6
40 % 748 783 10
30 % 856 907 15
Entity #2 | Chains: B
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 130 135 96
95 % 215 228 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 215 228 67
70 % 873 922 4
50 % 891 944 3
40 % 891 944 7
30 % 891 944 12
Entity #3 | Chains: C
PROTEIN (PEPTIDE P1027 (FAPGVFPYM)) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures