Sequence Similarity Clusters for the Entities in PDB 1BZ9

Entity #1 | Chains: A
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 57 61 194
95 % 61 65 249 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 63 67 256
70 % 689 716 6
50 % 691 721 6
40 % 737 772 10
30 % 845 896 15
Entity #2 | Chains: B
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 130 135 94
95 % 215 228 60 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 215 228 65
70 % 864 912 4
50 % 882 934 3
40 % 882 934 7
30 % 882 934 12
Entity #3 | Chains: C
PROTEIN (PEPTIDE P1027 (FAPGVFPYM)) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.