Sequence Similarity Clusters for the Entities in PDB 1BZ9

Entity #1 | Chains: A
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 60 64 197
95 % 64 68 255 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 66 70 265
70 % 705 732 6
50 % 707 737 7
40 % 753 788 10
30 % 868 919 15
Entity #2 | Chains: B
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 131 136 98
95 % 221 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 221 234 65
70 % 887 936 4
50 % 905 958 3
40 % 905 958 7
30 % 905 958 12
Entity #3 | Chains: C
PROTEIN (PEPTIDE P1027 (FAPGVFPYM)) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures