Sequence Similarity Clusters for the Entities in PDB 1BZ9

Entity #1 | Chains: A
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 277 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 53 55 205
95 % 57 59 265 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 59 61 271
70 % 658 681 6
50 % 660 686 6
40 % 705 736 10
30 % 806 853 15
Entity #2 | Chains: B
PROTEIN (CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 129 133 95
95 % 203 215 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 203 215 68
70 % 828 872 4
50 % 846 894 4
40 % 846 894 8
30 % 846 894 14
Entity #3 | Chains: C
PROTEIN (PEPTIDE P1027 (FAPGVFPYM)) protein, length: 9 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.