Sequence Similarity Clusters for the Entities in PDB 1BXR

Entity #1 | Chains: A,C,E,G
CARBAMOYL-PHOSPHATE SYNTHASE protein, length: 1073 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 1857
95 % 10 10 1403 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 10 10 1425
70 % 10 10 1437
50 % 10 10 1485
40 % 10 10 1468
30 % 10 10 1487
Entity #2 | Chains: B,D,F,H
CARBAMOYL-PHOSPHATE SYNTHASE protein, length: 382 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 8 1587
95 % 10 10 1417 Flexibility: No
Max RMSD: 1.2, Avg RMSD: 0.4
PDBFlex
90 % 10 10 1440
70 % 10 10 1448
50 % 10 10 1498
40 % 10 10 1485
30 % 10 10 1474

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures