Sequence Similarity Clusters for the Entities in PDB 1BWV

Entity #1 | Chains: A,C,E,G
PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) protein, length: 493 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4653
95 % 4 5 4376 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 4 5 4405
70 % 4 7 2231
50 % 27 49 131
40 % 30 58 124
30 % 44 88 93
Entity #2 | Chains: S,U,W,Y
PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23363
95 % 1 2 6117 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 4 5 4566
70 % 4 5 4487
50 % 4 6 3306
40 % 4 6 3207
30 % 4 6 3013

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures