Sequence Similarity Clusters for the Entities in PDB 1BWV

Entity #1 | Chains: A,C,E,G
PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) protein, length: 493 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 4778
95 % 4 5 4480 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 4 5 4519
70 % 6 9 1304
50 % 30 52 122
40 % 33 61 120
30 % 47 91 96
Entity #2 | Chains: S,U,W,Y
PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE) protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 23895
95 % 1 2 6243 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 4 5 4682
70 % 4 5 4593
50 % 6 8 1724
40 % 6 8 1737
30 % 6 8 1699

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures