Sequence Similarity Clusters for the Entities in PDB 1BWU

Entity #1 | Chains: A
PROTEIN (AGGLUTININ) protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69925
95 % 2 3 20614 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 6 9830
70 % 4 7 7206
50 % 14 20 1342
40 % 28 34 689
30 % 31 38 585
Entity #2 | Chains: D
PROTEIN (AGGLUTININ) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69580
95 % 2 3 20612 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 6 9830
70 % 5 7 7206
50 % 15 20 1342
40 % 29 34 689
30 % 32 38 585
Entity #3 | Chains: P
PROTEIN (AGGLUTININ) protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69926
95 % 3 3 20614
90 % 5 6 9830
70 % 6 7 7206
50 % 16 20 1342
40 % 30 34 689
30 % 33 38 585
Entity #4 | Chains: Q
PROTEIN (AGGLUTININ) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69581
95 % 3 3 20612 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 6 9830
70 % 7 7 7206
50 % 17 20 1342
40 % 31 34 689
30 % 34 38 585

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures