Sequence Similarity Clusters for the Entities in PDB 1BWU

Entity #1 | Chains: A
PROTEIN (AGGLUTININ) protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71183
95 % 2 3 21029 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 6 10048
70 % 4 7 7349
50 % 14 20 1371
40 % 28 34 708
30 % 31 38 590
Entity #2 | Chains: D
PROTEIN (AGGLUTININ) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70835
95 % 2 3 21027 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 6 10048
70 % 5 7 7349
50 % 15 20 1371
40 % 29 34 708
30 % 32 38 590
Entity #3 | Chains: P
PROTEIN (AGGLUTININ) protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71184
95 % 3 3 21029
90 % 5 6 10048
70 % 6 7 7349
50 % 16 20 1371
40 % 30 34 708
30 % 33 38 590
Entity #4 | Chains: Q
PROTEIN (AGGLUTININ) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 70836
95 % 3 3 21027 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 6 10048
70 % 7 7 7349
50 % 17 20 1371
40 % 31 34 708
30 % 34 38 590

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures