Sequence Similarity Clusters for the Entities in PDB 1BWU

Entity #1 | Chains: A
PROTEIN (AGGLUTININ) protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 69002
95 % 2 3 20309 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 6 9708
70 % 4 7 7107
50 % 14 20 1321
40 % 28 34 678
30 % 31 38 579
Entity #2 | Chains: D
PROTEIN (AGGLUTININ) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68657
95 % 2 3 20307 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 6 9708
70 % 5 7 7107
50 % 15 20 1321
40 % 29 34 678
30 % 32 38 579
Entity #3 | Chains: P
PROTEIN (AGGLUTININ) protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69003
95 % 3 3 20309
90 % 5 6 9708
70 % 6 7 7107
50 % 16 20 1321
40 % 30 34 678
30 % 33 38 579
Entity #4 | Chains: Q
PROTEIN (AGGLUTININ) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 68658
95 % 3 3 20307 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 6 9708
70 % 7 7 7107
50 % 17 20 1321
40 % 31 34 678
30 % 34 38 579

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.