Sequence Similarity Clusters for the Entities in PDB 1BWU

Entity #1 | Chains: A
PROTEIN (AGGLUTININ) protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39754
95 % 1 2 33553 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 6 9679
70 % 4 7 6882
50 % 14 20 1395
40 % 30 37 628
30 % 31 38 610
Entity #2 | Chains: D
PROTEIN (AGGLUTININ) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39756
95 % 2 3 19671 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 4 6 9679
70 % 5 7 6882
50 % 15 20 1395
40 % 31 37 628
30 % 32 38 610
Entity #3 | Chains: P
PROTEIN (AGGLUTININ) protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39754
95 % 2 2 33553 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 5 6 9679
70 % 6 7 6882
50 % 16 20 1395
40 % 32 37 628
30 % 33 38 610
Entity #4 | Chains: Q
PROTEIN (AGGLUTININ) protein, length: 109 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 39756
95 % 3 3 19671 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 6 6 9679
70 % 7 7 6882
50 % 17 20 1395
40 % 33 37 628
30 % 34 38 610

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures