Sequence Similarity Clusters for the Entities in PDB 1BVO

Entity #1 | Chains: D
DNA DUPLEX dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: E
DNA DUPLEX dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
TRANSCRIPTION FACTOR GAMBIF1 protein, length: 175 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63680
95 % 1 1 44341
90 % 1 1 42077
70 % 1 1 36986
50 % 1 1 31501
40 % 1 1 27784
30 % 1 1 23568

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures