Sequence Similarity Clusters for the Entities in PDB 1BVK

Entity #1 | Chains: A,D
HULYS11 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24066
95 % 1 2 20565 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 19992
70 % 130 191 73
50 % 205 308 22
40 % 637 934 5
30 % 712 1062 7
Entity #2 | Chains: B,E
HULYS11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23874
95 % 1 2 20406 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 2 19845
70 % 22 36 1261
50 % 396 581 7
40 % 638 934 5
30 % 713 1062 7
Entity #3 | Chains: C,F
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 617 665 3
95 % 669 718 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 683 735 5
70 % 898 955 7
50 % 905 963 8
40 % 937 997 11
30 % 937 997 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures