Sequence Similarity Clusters for the Entities in PDB 1BVK

Entity #1 | Chains: A,D
HULYS11 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24680
95 % 1 2 21050 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.5
PDBFlex
90 % 1 2 20445
70 % 129 193 75
50 % 204 312 23
40 % 644 956 5
30 % 719 1085 7
Entity #2 | Chains: B,E
HULYS11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 24480
95 % 1 2 20887 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 2 20295
70 % 54 76 538
50 % 404 599 6
40 % 645 956 5
30 % 720 1085 7
Entity #3 | Chains: C,F
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 619 668 3
95 % 671 721 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 685 738 5
70 % 902 961 7
50 % 909 969 8
40 % 941 1003 11
30 % 941 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures