Sequence Similarity Clusters for the Entities in PDB 1BVK

Entity #1 | Chains: A,D
HULYS11 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23237
95 % 1 2 19865 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 19316
70 % 130 188 71
50 % 202 302 22
40 % 604 887 5
30 % 677 1013 7
Entity #2 | Chains: B,E
HULYS11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23049
95 % 1 2 19710 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 2 19171
70 % 22 36 1225
50 % 366 540 8
40 % 605 887 5
30 % 678 1013 7
Entity #3 | Chains: C,F
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 600 646 3
95 % 652 699 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 666 716 5
70 % 878 933 7
50 % 885 941 7
40 % 917 975 11
30 % 917 975 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.