Sequence Similarity Clusters for the Entities in PDB 1BVK

Entity #1 | Chains: A,D
HULYS11 protein, length: 108 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23600
95 % 1 2 20206 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 2 19644
70 % 130 191 72
50 % 203 305 21
40 % 624 916 5
30 % 697 1042 7
Entity #2 | Chains: B,E
HULYS11 protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 23411
95 % 1 2 20050 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.7
PDBFlex
90 % 1 2 19500
70 % 22 36 1238
50 % 385 566 7
40 % 625 916 5
30 % 698 1042 7
Entity #3 | Chains: C,F
LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 607 655 3
95 % 659 708 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 673 725 5
70 % 885 942 7
50 % 892 950 8
40 % 924 984 11
30 % 924 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.