Sequence Similarity Clusters for the Entities in PDB 1BUI

Entity #1 | Chains: A,B
Plasminogen protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 12821
95 % 7 10 3345 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 7 10 3392
70 % 7 10 3353
50 % 7 10 3264
40 % 1568 1719 4
30 % 1692 1869 6
Entity #2 | Chains: C
Staphylokinase protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 29381
95 % 6 7 7370 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.5
PDBFlex
90 % 6 7 7329
70 % 6 7 7133
50 % 6 7 6580
40 % 6 7 6132
30 % 6 7 5487

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures