Sequence Similarity Clusters for the Entities in PDB 1BUI

Entity #1 | Chains: A,B
Plasminogen protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 13099
95 % 7 10 3484 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 7 10 3550
70 % 7 10 3500
50 % 7 10 3413
40 % 1696 1873 4
30 % 1705 1887 7
Entity #2 | Chains: C
Staphylokinase protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 38585
95 % 6 7 7204 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 1.5
PDBFlex
90 % 6 7 7168
70 % 6 7 6969
50 % 6 7 6460
40 % 6 7 5994
30 % 6 7 5255

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures