Sequence Similarity Clusters for the Entities in PDB 1BQQ

Entity #1 | Chains: M
MEMBRANE-TYPE MATRIX METALLOPROTEINASE protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 16154
95 % 4 4 15080 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 4 4 14797
70 % 4 4 13869
50 % 184 232 103
40 % 188 236 125
30 % 188 236 132
Entity #2 | Chains: T
METALLOPROTEINASE INHIBITOR 2 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 29216
95 % 3 3 24263 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 5 6 9638
70 % 5 6 9197
50 % 5 6 8321
40 % 6 8 5649
30 % 6 8 5068

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures