Sequence Similarity Clusters for the Entities in PDB 1BQQ

Entity #1 | Chains: M
MEMBRANE-TYPE MATRIX METALLOPROTEINASE protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 17191
95 % 4 4 15942 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 4 4 15606
70 % 4 4 14592
50 % 189 237 104
40 % 193 241 126
30 % 193 241 137
Entity #2 | Chains: T
METALLOPROTEINASE INHIBITOR 2 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26586
95 % 3 3 23412 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 5 6 9080
70 % 5 6 8713
50 % 5 6 7951
40 % 6 8 5578
30 % 6 8 4904

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures