Sequence Similarity Clusters for the Entities in PDB 1BQQ

Entity #1 | Chains: M
MEMBRANE-TYPE MATRIX METALLOPROTEINASE protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 15513
95 % 4 4 14549 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 4 4 14276
70 % 4 4 13393
50 % 184 232 97
40 % 188 236 118
30 % 188 236 129
Entity #2 | Chains: T
METALLOPROTEINASE INHIBITOR 2 protein, length: 184 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28206
95 % 3 3 23454 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.1
PDBFlex
90 % 5 6 9308
70 % 5 6 8902
50 % 5 6 8051
40 % 6 8 5466
30 % 6 8 4904

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.