Sequence Similarity Clusters for the Entities in PDB 1BQL

Entity #1 | Chains: L
HYHEL-5 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27655
95 % 6 22 1602 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 42 145 141
70 % 1140 2287 1
50 % 2334 4633 1
40 % 2334 4633 1
30 % 2667 5461 1
Entity #2 | Chains: H
HYHEL-5 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40445
95 % 2 3 22984 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 7 13 3156
70 % 1135 2244 2
50 % 2335 4633 1
40 % 2335 4633 1
30 % 2668 5461 1
Entity #3 | Chains: Y
BOBWHITE QUAIL LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23060
95 % 645 708 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 659 725 5
70 % 871 942 7
50 % 877 950 8
40 % 907 984 11
30 % 907 984 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.