Sequence Similarity Clusters for the Entities in PDB 1BQL

Entity #1 | Chains: L
HYHEL-5 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 28444
95 % 6 22 1655 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 43 148 140
70 % 1217 2416 1
50 % 2488 4892 1
40 % 2488 4892 1
30 % 2837 5759 1
Entity #2 | Chains: H
HYHEL-5 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41583
95 % 2 3 23595 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 7 13 3273
70 % 1207 2366 2
50 % 2489 4892 1
40 % 2489 4892 1
30 % 2838 5759 1
Entity #3 | Chains: Y
BOBWHITE QUAIL LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23749
95 % 656 719 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 670 736 5
70 % 885 956 7
50 % 891 964 8
40 % 921 998 11
30 % 921 998 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures