Sequence Similarity Clusters for the Entities in PDB 1BQL

Entity #1 | Chains: L
HYHEL-5 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27982
95 % 6 22 1622 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 43 146 143
70 % 1187 2362 1
50 % 2428 4781 1
40 % 2428 4781 1
30 % 2767 5635 1
Entity #2 | Chains: H
HYHEL-5 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40950
95 % 2 3 23253 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 7 13 3213
70 % 1177 2311 2
50 % 2429 4781 1
40 % 2429 4781 1
30 % 2768 5635 1
Entity #3 | Chains: Y
BOBWHITE QUAIL LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 23344
95 % 653 716 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 667 733 5
70 % 882 953 7
50 % 888 961 8
40 % 918 995 11
30 % 918 995 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures