Sequence Similarity Clusters for the Entities in PDB 1BQL

Entity #1 | Chains: L
HYHEL-5 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 26001
95 % 6 23 1606 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 43 148 145
70 % 1267 2516 1
50 % 2594 5101 1
40 % 2973 5750 1
30 % 3645 7168 1
Entity #2 | Chains: H
HYHEL-5 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 42061
95 % 2 3 25164 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.8
PDBFlex
90 % 7 13 3372
70 % 1260 2475 2
50 % 2595 5101 1
40 % 2974 5750 1
30 % 3646 7168 1
Entity #3 | Chains: Y
BOBWHITE QUAIL LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 653 717 3
95 % 670 734 3 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 684 751 5
70 % 901 974 7
50 % 907 982 8
40 % 937 1016 10
30 % 937 1016 18

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures