Sequence Similarity Clusters for the Entities in PDB 1BQL

Entity #1 | Chains: L
HYHEL-5 FAB (LIGHT CHAIN) protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 27167
95 % 6 22 1577 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.5
PDBFlex
90 % 42 145 141
70 % 1129 2264 1
50 % 2312 4587 1
40 % 2312 4587 1
30 % 2636 5392 1
Entity #2 | Chains: H
HYHEL-5 FAB (HEAVY CHAIN) protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39808
95 % 2 3 22553
90 % 7 13 3115
70 % 1124 2222 2
50 % 2313 4587 1
40 % 2313 4587 1
30 % 2637 5392 1
Entity #3 | Chains: Y
BOBWHITE QUAIL LYSOZYME protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 22654
95 % 638 699 4 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 652 716 5
70 % 864 933 7
50 % 870 941 7
40 % 900 975 11
30 % 900 975 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.