Sequence Similarity Clusters for the Entities in PDB 1BQH

Entity #1 | Chains: A,D
PROTEIN (H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 53 453
95 % 50 65 425 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 54 70 391
70 % 626 740 6
50 % 637 754 7
40 % 671 806 9
30 % 743 930 12
Entity #2 | Chains: B,E
PROTEIN (BETA-2-MICROGLOBULIN ) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 189 81
95 % 164 234 62 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 164 234 66
70 % 767 944 4
50 % 781 966 3
40 % 781 966 6
30 % 781 966 9
Entity #3 | Chains: C,F
PROTEIN (VSV8) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,H,I,K
PROTEIN (CD8A OR LYT2 OR LYT-2) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 5599
95 % 3 5 5572 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 3 5 5598
70 % 3 5 6031
50 % 3 5 5648
40 % 10 12 2313
30 % 4823 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures