Sequence Similarity Clusters for the Entities in PDB 1BQH

Entity #1 | Chains: A,D
PROTEIN (H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 53 456
95 % 50 65 433 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 54 70 402
70 % 631 746 5
50 % 642 760 6
40 % 676 812 8
30 % 751 939 12
Entity #2 | Chains: B,E
PROTEIN (BETA-2-MICROGLOBULIN ) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 189 86
95 % 164 234 63 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 164 234 67
70 % 775 953 3
50 % 789 975 2
40 % 789 975 5
30 % 789 975 8
Entity #3 | Chains: C,F
PROTEIN (VSV8) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,H,I,K
PROTEIN (CD8A OR LYT2 OR LYT-2) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 5667
95 % 3 5 5634 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 3 5 5666
70 % 3 5 6099
50 % 3 5 5708
40 % 10 12 2343
30 % 4921 7330 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures