Sequence Similarity Clusters for the Entities in PDB 1BQH

Entity #1 | Chains: A,D
PROTEIN (H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 53 503
95 % 50 65 469 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 54 70 441
70 % 664 784 6
50 % 677 800 7
40 % 711 852 9
30 % 804 998 12
Entity #2 | Chains: B,E
PROTEIN (BETA-2-MICROGLOBULIN ) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 151 205 87
95 % 180 251 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 180 251 70
70 % 826 1011 4
50 % 842 1035 3
40 % 842 1035 6
30 % 842 1035 10
Entity #3 | Chains: C,F
PROTEIN (VSV8) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,H,I,K
PROTEIN (CD8A OR LYT2 OR LYT-2) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 6018
95 % 3 5 5978 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 3 5 5981
70 % 3 5 6429
50 % 3 5 5983
40 % 10 12 2452
30 % 5207 7862 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures