Sequence Similarity Clusters for the Entities in PDB 1BQH

Entity #1 | Chains: A,D
PROTEIN (H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 53 463
95 % 50 65 444 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.1
PDBFlex
90 % 54 70 410
70 % 641 757 6
50 % 652 771 7
40 % 686 823 9
30 % 761 950 13
Entity #2 | Chains: B,E
PROTEIN (BETA-2-MICROGLOBULIN ) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 189 89
95 % 164 234 64 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.6
PDBFlex
90 % 164 234 70
70 % 785 965 4
50 % 799 987 3
40 % 799 987 6
30 % 799 987 9
Entity #3 | Chains: C,F
PROTEIN (VSV8) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,H,I,K
PROTEIN (CD8A OR LYT2 OR LYT-2) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 5782
95 % 3 5 5748 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 3 5 5768
70 % 3 5 6216
50 % 3 5 5816
40 % 10 12 2378
30 % 4996 7460 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures