Sequence Similarity Clusters for the Entities in PDB 1BQH

Entity #1 | Chains: A,D
PROTEIN (H-2 CLASS I HISTOCOMPATIBILITY ANTIGEN) protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 37 49 422
95 % 50 65 393
90 % 54 70 370
70 % 615 727 6
50 % 617 732 6
40 % 657 783 10
30 % 725 907 15
Entity #2 | Chains: B,E
PROTEIN (BETA-2-MICROGLOBULIN ) protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 135 96
95 % 160 228 63
90 % 160 228 67
70 % 750 922 4
50 % 764 944 3
40 % 764 944 7
30 % 764 944 12
Entity #3 | Chains: C,F
PROTEIN (VSV8) protein, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,H,I,K
PROTEIN (CD8A OR LYT2 OR LYT-2) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 5 5475
95 % 3 5 6134
90 % 3 5 6131
70 % 3 5 5974
50 % 3 5 5608
40 % 10 12 2252
30 % 10 12 2147

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures