Sequence Similarity Clusters for the Entities in PDB 1BPZ

Entity #1 | Chains: T
DNA (5'-D(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*G)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
DNA (5'-D(*GP*TP*CP*GP*G)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
PROTEIN (DNA POLYMERASE BETA) protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 289 306 88
95 % 302 322 82 Flexibility: Medium
Max RMSD: 14.0, Avg RMSD: 3.1
PDBFlex
90 % 302 322 85
70 % 302 322 103
50 % 302 322 142
40 % 302 322 155
30 % 423 452 116

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures