Sequence Similarity Clusters for the Entities in PDB 1BPZ

Entity #1 | Chains: T
DNA (5'-D(*CP*CP*GP*AP*CP*CP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') dna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: P
DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*G)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D
DNA (5'-D(*GP*TP*CP*GP*G)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: A
PROTEIN (DNA POLYMERASE BETA) protein, length: 335 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 263 280 79
95 % 302 322 79 Flexibility: Medium
Max RMSD: 14.0, Avg RMSD: 3.1
PDBFlex
90 % 302 322 83
70 % 302 322 98
50 % 302 322 136
40 % 302 322 152
30 % 423 452 107

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures