Sequence Similarity Clusters for the Entities in PDB 1BPB

Entity #1 | Chains: A
DNA POLYMERASE BETA protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 6666
95 % 2 13 5266 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 2 13 5289
70 % 2 13 5155
50 % 2 13 4918
40 % 2 13 4631
30 % 2 13 4171

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2VAN 1 A DNA POLYMERSE BETA 31K DOMAIN, RESIDUES 90-334 10116 2.7.7.7 | Details 4.2.99 | Details
2 1BPB 1 A DNA POLYMERASE BETA 10116 2.7.7.7 | Details 4.2.99 | Details
3 1RPL 1 A DNA POLYMERASE BETA 10116 2.7.7.7 | Details 4.2.99 | Details
4 1JN3 1 A DNA POLYMERASE BETA CATALYTIC DOMAIN, RESIDUES 85 - 335 10116 2.7.7.7 | Details 4.2.99 | Details
5 2BPC 1 A DNA POLYMERASE BETA 10116 2.7.7.7 | Details 4.2.99 | Details
6 3K75 2 D, E DNA polymerase beta UNP residues 91 to 335 10116 2.7.7.7 | Details 4.2.99 | Details
7 1NOM 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF MNCL2 (5 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
8 1ZQU 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
9 1ZQV 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
10 1ZQW 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
11 1ZQX 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
12 1ZQY 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF MGCL2 (50 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
13 1ZQZ 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF MNCL2 (50 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details