Sequence Similarity Clusters for the Entities in PDB 1BPB

Entity #1 | Chains: A
DNA POLYMERASE BETA protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 6513
95 % 2 13 5163 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 2 13 5190
70 % 2 13 5045
50 % 2 13 4811
40 % 2 13 4520
30 % 2 13 4078

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1BPB 1 A DNA POLYMERASE BETA 10116 2.7.7.7 | Details 4.2.99 | Details
2 2BPC 1 A DNA POLYMERASE BETA 10116 2.7.7.7 | Details 4.2.99 | Details
3 3K75 2 D, E DNA polymerase beta UNP residues 91 to 335 10116 2.7.7.7 | Details 4.2.99 | Details
4 1NOM 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF MNCL2 (5 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
5 1ZQU 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF ARTIFICIAL MOTHER LIQUOR C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
6 1ZQV 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
7 1ZQW 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF CSCL (150 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
8 1ZQX 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF KCL (150 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
9 1ZQY 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF MGCL2 (50 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details
10 1ZQZ 1 A DNA POLYMERASE BETA SOAKED IN THE PRESENCE OF MNCL2 (50 MILLIMOLAR) C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335) 10116 2.7.7.7 | Details 4.2.99 | Details