Sequence Similarity Clusters for the Entities in PDB 1BNZ

Entity #1 | Chains: B,C
5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3' dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
DNA-BINDING PROTEIN 7A protein, length: 64 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 47587
95 % 3 8 7913 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 3 8 7868
70 % 8 26 2023
50 % 8 26 2025
40 % 8 26 2025
30 % 8 26 1958

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.