Sequence Similarity Clusters for the Entities in PDB 1BND

Entity #1 | Chains: A
BRAIN DERIVED NEUROTROPHIC FACTOR protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67717
95 % 1 2 34416 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 1.0
PDBFlex
90 % 1 2 32896
70 % 1 2 29283
50 % 2 24 1268
40 % 2 24 1282
30 % 2 24 1253
Entity #2 | Chains: B
NEUROTROPHIN 3 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 67718
95 % 1 4 14869 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.4
PDBFlex
90 % 1 4 14598
70 % 1 4 13672
50 % 3 24 1268
40 % 3 24 1282
30 % 3 24 1253

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.