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PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1BMV
Sequence Clusters for the Sequence Entities in PDB 1BMV
Entity #1: Chains: M - RNA (5'-R(*GP*GP*UP*CP*AP*AP*AP*AP*UP*GP*C)-3') rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: 1 - PROTEIN (ICOSAHEDRAL VIRUS - A DOMAIN) protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 21573
95% 3 3 18107
90% 3 3 17559
70% 3 3 16180
50% 3 3 14169
40% 3 3 12720
30% 3 3 10925
Entity #3: Chains: 2 - PROTEIN (ICOSAHEDRAL VIRUS - B AND C DOMAIN) protein, length: 374 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 19927
95% 3 3 16985
90% 3 3 16551
70% 3 3 15333
50% 5 5 9048
40% 5 5 8248
30% 5 5 7263
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.