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An Information Portal to 110206 Biological Macromolecular Structures

PROTEIN-RNA INTERACTIONS IN AN ICOSAHEDRAL VIRUS AT 3.0 ANGSTROMS RESOLUTION
Sequence Clustering and Redundancy Reduction Results
1BMV
Sequence Clusters for the Sequence Entities in PDB 1BMV
Entity #1: Chains: M - RNA (5'-R(*GP*GP*UP*CP*AP*AP*AP*AP*UP*GP*C)-3') rna, length: 11 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: 1 - PROTEIN (ICOSAHEDRAL VIRUS - A DOMAIN) protein, length: 198 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 22261
95% 3 3 18654
90% 3 3 18094
70% 3 3 16678
50% 3 3 14603
40% 3 3 13093
30% 3 3 11236
Entity #3: Chains: 2 - PROTEIN (ICOSAHEDRAL VIRUS - B AND C DOMAIN) protein, length: 374 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 20541
95% 3 3 17481
90% 3 3 17039
70% 3 3 15804
50% 5 5 9290
40% 5 5 8468
30% 5 5 7441
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.