Sequence Similarity Clusters for the Entities in PDB 1BMV

Entity #1 | Chains: M
RNA (5'-R(*GP*GP*UP*CP*AP*AP*AP*AP*UP*GP*C)-3') rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
PROTEIN (ICOSAHEDRAL VIRUS - A DOMAIN) protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28449
95 % 3 3 23660 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 3 3 22867
70 % 3 3 20872
50 % 3 3 18063
40 % 3 3 16096
30 % 3 3 13767
Entity #3 | Chains: 2
PROTEIN (ICOSAHEDRAL VIRUS - B AND C DOMAIN) protein, length: 374 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 26287
95 % 3 3 22202 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 3 3 21561
70 % 3 3 19786
50 % 6 10 6200
40 % 6 10 5789
30 % 6 10 5199

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures