Sequence Similarity Clusters for the Entities in PDB 1BMV

Entity #1 | Chains: M
RNA (5'-R(*GP*GP*UP*CP*AP*AP*AP*AP*UP*GP*C)-3') rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
PROTEIN (ICOSAHEDRAL VIRUS - A DOMAIN) protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 23660
95 % 3 3 19803
90 % 3 3 19173
70 % 3 3 17605
50 % 3 3 15360
40 % 3 3 13743
30 % 3 3 11773
Entity #3 | Chains: 2
PROTEIN (ICOSAHEDRAL VIRUS - B AND C DOMAIN) protein, length: 374 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 21846
95 % 3 3 18579
90 % 3 3 18071
70 % 3 3 16688
50 % 5 7 7383
40 % 5 7 6806
30 % 5 7 6049

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.