Sequence Similarity Clusters for the Entities in PDB 1BMV

Entity #1 | Chains: M
RNA (5'-R(*GP*GP*UP*CP*AP*AP*AP*AP*UP*GP*C)-3') rna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: 1
PROTEIN (ICOSAHEDRAL VIRUS - A DOMAIN) protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 27337
95 % 3 3 22734 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 3 3 21996
70 % 3 3 20150
50 % 3 3 17470
40 % 3 3 15581
30 % 3 3 13320
Entity #3 | Chains: 2
PROTEIN (ICOSAHEDRAL VIRUS - B AND C DOMAIN) protein, length: 374 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 25248
95 % 3 3 21328 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 3 3 20730
70 % 3 3 19088
50 % 6 10 5965
40 % 6 10 5567
30 % 6 10 5007

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.