Sequence Similarity Clusters for the Entities in PDB 1BMO

Entity #1 | Chains: A,B
BM-40 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40743
95 % 2 3 14826 Flexibility: Medium
Max RMSD: 4.7, Avg RMSD: 3.0
PDBFlex
90 % 2 3 14584
70 % 2 3 13689
50 % 2 3 12158
40 % 2 3 11004
30 % 2 3 9572

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1NUB 1 A, B BASEMENT MEMBRANE PROTEIN BM-40 HELIX C (RESIDUES 196-203) DELETION MUTANT FS-EC DOMAIN PAIR, FS, FOLLISTATIN-LIKE, EC, EXTRACELLULAR CALCIUM-BINDING 9606
2 1BMO 1 A, B BM-40 FS/EC DOMAIN PAIR, RESIDUES 53 - 286 9606
3 2V53 1 A SPARC FS AND EC DOMAINS, RESIDUES 70-212,221-303 9606