Sequence Similarity Clusters for the Entities in PDB 1BML

Entity #1 | Chains: A,B
PLASMIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8562
95 % 9 10 3172 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 9 10 3216
70 % 9 10 3188
50 % 9 10 3105
40 % 1570 1674 4
30 % 1704 1822 6
Entity #2 | Chains: C,D
STREPTOKINASE protein, length: 362 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33280
95 % 1 1 26531
90 % 1 1 25652
70 % 1 1 23332
50 % 1 1 20118
40 % 1 1 17822
30 % 1 1 15232

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.