Sequence Similarity Clusters for the Entities in PDB 1BML

Entity #1 | Chains: A,B
PLASMIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8676
95 % 9 10 3215 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 9 10 3260
70 % 9 10 3228
50 % 9 10 3150
40 % 1578 1682 4
30 % 1713 1831 6
Entity #2 | Chains: C,D
STREPTOKINASE protein, length: 362 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 33683
95 % 1 1 26832
90 % 1 1 25937
70 % 1 1 23585
50 % 1 1 20326
40 % 1 1 18006
30 % 1 1 15392

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.