Sequence Similarity Clusters for the Entities in PDB 1BML

Entity #1 | Chains: A,B
PLASMIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 13099
95 % 9 10 3484 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 9 10 3550
70 % 9 10 3500
50 % 9 10 3413
40 % 1753 1873 4
30 % 1764 1887 7
Entity #2 | Chains: C,D
STREPTOKINASE protein, length: 362 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 33524
95 % 1 1 28837 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 27709
70 % 1 1 24975
50 % 1 1 21412
40 % 1 1 18896
30 % 1 1 15820

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures