Sequence Similarity Clusters for the Entities in PDB 1BML

Entity #1 | Chains: A,B
PLASMIN protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 8782
95 % 9 10 3261 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 9 10 3304
70 % 9 10 3277
50 % 9 10 3198
40 % 1581 1685 4
30 % 1716 1834 6
Entity #2 | Chains: C,D
STREPTOKINASE protein, length: 362 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34271
95 % 1 1 27324 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 1 26396
70 % 1 1 23913
50 % 1 1 20576
40 % 1 1 18227
30 % 1 1 15581

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.