Sequence Similarity Clusters for the Entities in PDB 1BM3

Entity #1 | Chains: L
IMMUNOGLOBULIN OPG2 FAB, CONSTANT DOMAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 41319
95 % 2 29 1626 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 4 37 1190
70 % 305 2385 1
50 % 625 4827 1
40 % 625 4827 1
30 % 677 5688 1
Entity #2 | Chains: H
IMMUNOGLOBULIN OPG2 FAB, VARIABLE DOMAIN protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40232
95 % 1 2 30861 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 2 29740
70 % 304 2334 2
50 % 626 4827 1
40 % 626 4827 1
30 % 678 5688 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures