Sequence Similarity Clusters for the Entities in PDB 1BM3

Entity #1 | Chains: L
IMMUNOGLOBULIN OPG2 FAB, CONSTANT DOMAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 40539
95 % 2 25 1874 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.7
PDBFlex
90 % 4 33 1303
70 % 287 2287 1
50 % 589 4633 1
40 % 589 4633 1
30 % 639 5461 1
Entity #2 | Chains: H
IMMUNOGLOBULIN OPG2 FAB, VARIABLE DOMAIN protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 39477
95 % 1 2 30312
90 % 1 2 29213
70 % 287 2244 2
50 % 590 4633 1
40 % 590 4633 1
30 % 640 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.