Sequence Similarity Clusters for the Entities in PDB 1BM3

Entity #1 | Chains: L
IMMUNOGLOBULIN OPG2 FAB, CONSTANT DOMAIN protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 39347
95 % 2 25 1809 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.6
PDBFlex
90 % 4 33 1273
70 % 230 1822 2
50 % 571 4489 1
40 % 571 4489 1
30 % 617 5290 1
Entity #2 | Chains: H
IMMUNOGLOBULIN OPG2 FAB, VARIABLE DOMAIN protein, length: 227 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 38313
95 % 1 2 29420 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.6
PDBFlex
90 % 1 2 28373
70 % 278 2172 1
50 % 572 4489 1
40 % 572 4489 1
30 % 618 5290 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.