Sequence Similarity Clusters for the Entities in PDB 1BLN

Entity #1 | Chains: A,C
PROTEIN (MONOCLONAL ANTIBODY MRK-16 (LIGHT CHAIN)) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39501
95 % 1 1 31468 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 138 162 146
70 % 1650 2538 1
50 % 3354 5152 1
40 % 3812 5806 1
30 % 4750 7240 1
Entity #2 | Chains: B,D
PROTEIN (MONOCLONAL ANTIBODY MRK-16 (HEAVY CHAIN)) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 36997
95 % 1 1 31472 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 9 16 2332
70 % 1620 2497 2
50 % 3355 5152 1
40 % 3813 5806 1
30 % 4751 7240 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures