Sequence Similarity Clusters for the Entities in PDB 1BKD

Entity #1 | Chains: R
H-RAS protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 60 518
95 % 209 233 79 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 214 238 79
70 % 216 240 93
50 % 253 289 97
40 % 402 483 21
30 % 655 822 16
Entity #2 | Chains: S
SON OF SEVENLESS-1 protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2735
95 % 17 19 3384 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.2
PDBFlex
90 % 17 19 3435
70 % 17 19 3387
50 % 17 19 3304
40 % 17 19 3215
30 % 17 19 3010

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures