Sequence Similarity Clusters for the Entities in PDB 1BKD

Entity #1 | Chains: R
H-RAS protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 60 498
95 % 132 150 213 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 188 211 99
70 % 190 213 113
50 % 227 261 110
40 % 373 451 21
30 % 619 782 16
Entity #2 | Chains: S
SON OF SEVENLESS-1 protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2618
95 % 17 19 3246 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.2
PDBFlex
90 % 17 19 3293
70 % 17 19 3253
50 % 17 19 3177
40 % 17 19 3098
30 % 17 19 2900

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.