Sequence Similarity Clusters for the Entities in PDB 1BKD

Entity #1 | Chains: R
H-RAS protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 52 60 511
95 % 207 231 78 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 1.5
PDBFlex
90 % 212 236 78
70 % 214 238 93
50 % 251 287 97
40 % 397 478 21
30 % 650 817 16
Entity #2 | Chains: S
SON OF SEVENLESS-1 protein, length: 477 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 19 2703
95 % 17 19 3343 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.2
PDBFlex
90 % 17 19 3389
70 % 17 19 3348
50 % 17 19 3260
40 % 17 19 3176
30 % 17 19 2970

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures