Sequence Similarity Clusters for the Entities in PDB 1BKC

Entity #1 | Chains: A,C
TUMOR NECROSIS FACTOR-ALPHA-CONVERTING ENZYME protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 3400
95 % 13 24 1184 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 13 24 1208
70 % 13 24 1234
50 % 13 24 1271
40 % 13 24 1263
30 % 13 24 1259
Entity #2 | Chains: E
TUMOR NECROSIS FACTOR-ALPHA-CONVERTING ENZYME protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57926
95 % 14 24 1184 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 14 24 1208
70 % 14 24 1234
50 % 14 24 1271
40 % 14 24 1263
30 % 14 24 1259
Entity #3 | Chains: I
TUMOR NECROSIS FACTOR-ALPHA-CONVERTING ENZYME protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 3400
95 % 15 24 1184 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.2
PDBFlex
90 % 15 24 1208
70 % 15 24 1234
50 % 15 24 1271
40 % 15 24 1263
30 % 15 24 1259

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures