Sequence Similarity Clusters for the Entities in PDB 1BKC

Entity #1 | Chains: A,C
TUMOR NECROSIS FACTOR-ALPHA-CONVERTING ENZYME protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 3123
95 % 13 24 1148 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 13 24 1170
70 % 13 24 1200
50 % 13 24 1250
40 % 13 24 1261
30 % 13 24 1238
Entity #2 | Chains: E
TUMOR NECROSIS FACTOR-ALPHA-CONVERTING ENZYME protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59917
95 % 14 24 1148 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 14 24 1170
70 % 14 24 1200
50 % 14 24 1250
40 % 14 24 1261
30 % 14 24 1238
Entity #3 | Chains: I
TUMOR NECROSIS FACTOR-ALPHA-CONVERTING ENZYME protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 59918
95 % 15 24 1148 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 15 24 1170
70 % 15 24 1200
50 % 15 24 1250
40 % 15 24 1261
30 % 15 24 1238

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures