Sequence Similarity Clusters for the Entities in PDB 1BK6

Entity #1 | Chains: A,B
KARYOPHERIN ALPHA protein, length: 422 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34287
95 % 10 10 3821 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 10 10 3881
70 % 10 10 3828
50 % 100 102 444
40 % 104 106 457
30 % 104 106 454
Entity #2 | Chains: C,E
LARGE T ANTIGEN protein, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: D,F
LARGE T ANTIGEN protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures