Sequence Similarity Clusters for the Entities in PDB 1BJM

Entity #1 | Chains: A,B
LOC - LAMBDA 1 TYPE LIGHT-CHAIN DIMER protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 13050
95 % 1 3 12388 Flexibility: Medium
Max RMSD: 15.2, Avg RMSD: 9.4
PDBFlex
90 % 1 3 12202
70 % 605 2516 1
50 % 1247 5101 1
40 % 1470 5750 1
30 % 1801 7168 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures