Sequence Similarity Clusters for the Entities in PDB 1BJ6

Entity #1 | Chains: D
DNA (5'-D(*AP*CP*GP*CP*C)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A
NUCLEOCAPSID PROTEIN 7 protein, length: 42 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 16438
95 % 7 7 11046
90 % 7 7 10902
70 % 7 7 10345
50 % 7 7 9364
40 % 7 7 8573
30 % 7 7 7548

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures