Sequence Similarity Clusters for the Entities in PDB 1BJ3

Entity #1 | Chains: A
PROTEIN (COAGULATION FACTOR IX-BINDING PROTEIN A) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 13920
95 % 5 5 13227 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 5 5 13011
70 % 9 9 5978
50 % 17 28 1285
40 % 36 60 635
30 % 141 220 101
Entity #2 | Chains: B
PROTEIN (COAGULATION FACTOR IX-BINDING PROTEIN B) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 7540
95 % 6 6 8096 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 6 6 8039
70 % 9 9 5997
50 % 16 25 1519
40 % 37 60 635
30 % 142 220 101

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures