Sequence Similarity Clusters for the Entities in PDB 1BJ3

Entity #1 | Chains: A
PROTEIN (COAGULATION FACTOR IX-BINDING PROTEIN A) protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 13709
95 % 5 5 13047 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 5 5 12823
70 % 9 9 5898
50 % 17 28 1267
40 % 36 60 625
30 % 141 220 100
Entity #2 | Chains: B
PROTEIN (COAGULATION FACTOR IX-BINDING PROTEIN B) protein, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 7408
95 % 6 6 7984 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 6 6 7928
70 % 9 9 5916
50 % 16 25 1500
40 % 37 60 625
30 % 142 220 100

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.