Sequence Similarity Clusters for the Entities in PDB 1BJ1

Entity #1 | Chains: J,L
FAB FRAGMENT protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40807
95 % 53 170 67 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 298 720 3
70 % 987 2327 1
50 % 2017 4713 1
40 % 2017 4713 1
30 % 2276 5567 1
Entity #2 | Chains: H,K
FAB FRAGMENT protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39463
95 % 1 2 18124 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 89 223 38
70 % 975 2280 2
50 % 2018 4713 1
40 % 2018 4713 1
30 % 2277 5567 1
Entity #3 | Chains: V,W
VASCULAR ENDOTHELIAL GROWTH FACTOR protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 30 385
95 % 16 35 403 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 16 35 434
70 % 16 37 448
50 % 18 40 508
40 % 20 44 513
30 % 20 49 479

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.