Sequence Similarity Clusters for the Entities in PDB 1BJ1

Entity #1 | Chains: J,L
FAB FRAGMENT protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 39677
95 % 49 161 71 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.3
PDBFlex
90 % 283 685 3
70 % 786 1845 2
50 % 1952 4545 1
40 % 1952 4545 1
30 % 2196 5350 1
Entity #2 | Chains: H,K
FAB FRAGMENT protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 38366
95 % 1 2 17569 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 84 209 42
70 % 945 2201 1
50 % 1953 4545 1
40 % 1953 4545 1
30 % 2197 5350 1
Entity #3 | Chains: V,W
VASCULAR ENDOTHELIAL GROWTH FACTOR protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 29 390
95 % 15 34 409 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 15 34 444
70 % 15 36 450
50 % 17 39 506
40 % 19 43 509
30 % 19 48 473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.