Sequence Similarity Clusters for the Entities in PDB 1BJ1

Entity #1 | Chains: J,L
FAB FRAGMENT protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 39023
95 % 47 156 72
90 % 277 665 3
70 % 773 1803 2
50 % 1921 4435 1
40 % 1921 4435 1
30 % 2163 5225 1
Entity #2 | Chains: H,K
FAB FRAGMENT protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 37740
95 % 1 2 17291
90 % 1 2 16937
70 % 930 2145 1
50 % 1922 4435 1
40 % 1922 4435 1
30 % 2164 5225 1
Entity #3 | Chains: V,W
VASCULAR ENDOTHELIAL GROWTH FACTOR protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 29 365
95 % 15 34 386
90 % 15 34 417
70 % 15 36 435
50 % 17 39 493
40 % 19 43 502
30 % 19 48 465

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.