Sequence Similarity Clusters for the Entities in PDB 1BJ1

Entity #1 | Chains: J,L
FAB FRAGMENT protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 41427
95 % 64 186 64 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 2.2
PDBFlex
90 % 314 746 3
70 % 1024 2392 1
50 % 2092 4843 1
40 % 2092 4843 1
30 % 2358 5705 1
Entity #2 | Chains: H,K
FAB FRAGMENT protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 40052
95 % 1 2 18391 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 101 243 38
70 % 1011 2342 2
50 % 2093 4843 1
40 % 2093 4843 1
30 % 2359 5705 1
Entity #3 | Chains: V,W
VASCULAR ENDOTHELIAL GROWTH FACTOR protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 30 400
95 % 16 35 453 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 16 35 490
70 % 16 37 495
50 % 18 40 516
40 % 20 44 525
30 % 20 49 486

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures