Sequence Similarity Clusters for the Entities in PDB 1BJ1

Entity #1 | Chains: J,L
FAB FRAGMENT protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19861
95 % 1 2 18032 Flexibility: Low
Max RMSD: 7.7, Avg RMSD: 2.3
PDBFlex
90 % 338 780 2
70 % 1093 2553 1
50 % 2238 5180 1
40 % 2568 5834 1
30 % 3121 7269 1
Entity #2 | Chains: H,K
FAB FRAGMENT protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32034
95 % 1 2 18031 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 124 284 17
70 % 1083 2511 2
50 % 2239 5180 1
40 % 2569 5834 1
30 % 3122 7269 1
Entity #3 | Chains: V,W
VASCULAR ENDOTHELIAL GROWTH FACTOR protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 16 33 404
95 % 16 35 465 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 16 35 500
70 % 16 37 514
50 % 18 40 534
40 % 20 44 544
30 % 20 49 500

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures