Sequence Similarity Clusters for the Entities in PDB 1BJ1

Entity #1 | Chains: J,L
FAB FRAGMENT protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 40268
95 % 49 165 69
90 % 287 697 3
70 % 965 2280 1
50 % 1974 4619 1
40 % 1974 4619 1
30 % 2224 5440 1
Entity #2 | Chains: H,K
FAB FRAGMENT protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 38939
95 % 1 2 17893
90 % 87 217 39
70 % 956 2238 2
50 % 1975 4619 1
40 % 1975 4619 1
30 % 2225 5440 1
Entity #3 | Chains: V,W
VASCULAR ENDOTHELIAL GROWTH FACTOR protein, length: 102 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 30 375
95 % 16 35 391
90 % 16 35 423
70 % 16 37 440
50 % 18 40 504
40 % 20 44 505
30 % 20 49 473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.