Sequence Similarity Clusters for the Entities in PDB 1BII

Entity #1 | Chains: A
MHC CLASS I H-2DD protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55100
95 % 1 1 39921
90 % 1 1 38110
70 % 8 9 2998
50 % 8 10 2822
40 % 8 10 2771
30 % 8 10 2599
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69003
95 % 4 4 20549
90 % 4 4 19974
70 % 4 4 18370
50 % 7 9 5661
40 % 10 12 3632
30 % 10 12 3397
Entity #3 | Chains: P
DECAMERIC PEPTIDE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures