Sequence Similarity Clusters for the Entities in PDB 1BII

Entity #1 | Chains: A
MHC CLASS I H-2DD protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 52419
95 % 1 1 43222
90 % 1 1 41147
70 % 8 9 3128
50 % 11 13 2461
40 % 11 13 2425
30 % 11 13 2272
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 17697
95 % 4 4 16317 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 4 4 15964
70 % 4 4 14906
50 % 8 10 4966
40 % 10 12 3776
30 % 10 12 3450
Entity #3 | Chains: P
DECAMERIC PEPTIDE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures