Sequence Similarity Clusters for the Entities in PDB 1BII

Entity #1 | Chains: A
MHC CLASS I H-2DD protein, length: 365 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 55814
95 % 1 1 40418
90 % 1 1 38569
70 % 8 9 3034
50 % 11 13 2384
40 % 11 13 2356
30 % 11 13 2243
Entity #2 | Chains: B
BETA-2 MICROGLOBULIN protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 69876
95 % 4 4 20847
90 % 4 4 20256
70 % 4 4 18618
50 % 8 10 5086
40 % 11 13 3515
30 % 11 13 3287
Entity #3 | Chains: P
DECAMERIC PEPTIDE protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures