Sequence Similarity Clusters for the Entities in PDB 1BHX

Entity #1 | Chains: A
ALPHA THROMBIN protein, length: 30 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 248 333 44
95 % 249 334 60 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 249 334 64
70 % 250 336 77
50 % 250 336 100
40 % 250 336 123
30 % 250 336 134
Entity #2 | Chains: B
ALPHA THROMBIN protein, length: 147 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 21863
95 % 3 4 18860 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 4 18368
70 % 5 8 8762
50 % 5 8 7926
40 % 5 8 7276
30 % 36 50 956
Entity #3 | Chains: F
ALPHA THROMBIN protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 15359
95 % 5 9 7724 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 0.6
PDBFlex
90 % 5 9 7681
70 % 5 9 7420
50 % 5 9 6841
40 % 37 52 953
30 % 37 52 927
Entity #4 | Chains: E
ALPHA THROMBIN protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.