Sequence Similarity Clusters for the Entities in PDB 1BHM

Entity #1 | Chains: C,D
DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3') dna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
PROTEIN (BAMHI (E.C.3.1.21.4)) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 7285
95 % 5 5 7857 Flexibility: Medium
Max RMSD: 6.6, Avg RMSD: 3.5
PDBFlex
90 % 5 5 7799
70 % 5 5 7570
50 % 5 5 6973
40 % 5 5 6477
30 % 5 5 5779

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures