Sequence Similarity Clusters for the Entities in PDB 1BGY

Entity #1 | Chains: A,M
CYTOCHROME BC1 COMPLEX protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 24 1188
95 % 23 29 1250 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 23 30 1194
70 % 37 47 674
50 % 37 47 727
40 % 37 47 758
30 % 45 55 632
Entity #10 | Chains: J,V
CYTOCHROME BC1 COMPLEX protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 27 964
95 % 23 32 1111 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.2
PDBFlex
90 % 23 32 1134
70 % 36 46 696
50 % 36 46 744
40 % 36 46 773
30 % 36 46 767
Entity #11 | Chains: K,W
CYTOCHROME BC1 COMPLEX protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 10646
95 % 15 21 2095 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 15 22 1939
70 % 15 22 1960
50 % 15 22 1966
40 % 15 22 1959
30 % 15 22 1887
Entity #2 | Chains: B,N
CYTOCHROME BC1 COMPLEX protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 25 1189
95 % 24 30 1251 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 25 34 1114
70 % 38 48 675
50 % 38 48 728
40 % 38 48 759
30 % 38 48 754
Entity #3 | Chains: C,O
CYTOCHROME BC1 COMPLEX protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 22 25 1113
95 % 22 25 1511 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.7
PDBFlex
90 % 22 29 1200
70 % 36 46 676
50 % 44 54 609
40 % 51 62 458
30 % 51 62 459
Entity #4 | Chains: D,P
CYTOCHROME BC1 COMPLEX protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 26 1001
95 % 21 29 1260 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 21 29 1288
70 % 34 43 752
50 % 42 51 654
40 % 42 51 685
30 % 49 59 479
Entity #5 | Chains: E,Q
CYTOCHROME BC1 COMPLEX protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 21 1606
95 % 19 24 1622 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 20 27 1512
70 % 33 41 833
50 % 41 49 720
40 % 48 57 498
30 % 48 57 499
Entity #6 | Chains: F,R
CYTOCHROME BC1 COMPLEX protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 22 1310
95 % 22 29 1181 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 23 32 1131
70 % 36 46 691
50 % 36 46 741
40 % 36 46 770
30 % 36 46 764
Entity #7 | Chains: G,S
CYTOCHROME BC1 COMPLEX protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 24 1174
95 % 22 29 1184 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.0
PDBFlex
90 % 23 32 1133
70 % 23 32 1164
50 % 36 46 742
40 % 36 46 772
30 % 36 46 766
Entity #8 | Chains: H,T
CYTOCHROME BC1 COMPLEX protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 21 1575
95 % 19 24 1778 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 32 38 872
70 % 35 42 792
50 % 35 42 838
40 % 35 42 868
30 % 35 42 854
Entity #9 | Chains: I,U
CYTOCHROME BC1 COMPLEX protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 13 15 2527
95 % 14 16 2808 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 14 17 2604
70 % 14 17 2588
50 % 16 19 2119
40 % 16 19 2109
30 % 16 19 2023

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.