Sequence Similarity Clusters for the Entities in PDB 1BGX

Entity #1 | Chains: T
TAQ DNA POLYMERASE protein, length: 832 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30385
95 % 1 3 21131 Flexibility: High
Max RMSD: 32.7, Avg RMSD: 22.1
PDBFlex
90 % 1 3 20534
70 % 1 3 18858
50 % 1 3 16403
40 % 1 3 14653
30 % 1 3 12572
Entity #2 | Chains: L
TP7 MAB protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40931
95 % 4 10 3524 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 31 145 141
70 % 813 2287 1
50 % 1664 4633 1
40 % 1664 4633 1
30 % 1866 5461 1
Entity #3 | Chains: H
TP7 MAB protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 40682
95 % 2 2 31006 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 2 29712
70 % 802 2244 2
50 % 1665 4633 1
40 % 1665 4633 1
30 % 1867 5461 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.