Sequence Similarity Clusters for the Entities in PDB 1BGX

Entity #1 | Chains: T
TAQ DNA POLYMERASE protein, length: 832 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31242
95 % 1 3 21697 Flexibility: High
Max RMSD: 32.7, Avg RMSD: 22.1
PDBFlex
90 % 1 3 21063
70 % 1 3 19335
50 % 1 3 16804
40 % 1 3 14996
30 % 1 3 12866
Entity #2 | Chains: L
TP7 MAB protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42089
95 % 4 10 3643 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 31 148 140
70 % 868 2416 1
50 % 1773 4892 1
40 % 1773 4892 1
30 % 1989 5759 1
Entity #3 | Chains: H
TP7 MAB protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41833
95 % 2 2 31821 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 2 30470
70 % 854 2366 2
50 % 1774 4892 1
40 % 1774 4892 1
30 % 1990 5759 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures