Sequence Similarity Clusters for the Entities in PDB 1BGX

Entity #1 | Chains: T
TAQ DNA POLYMERASE protein, length: 832 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 31657
95 % 1 3 22018 Flexibility: High
Max RMSD: 32.7, Avg RMSD: 22.1
PDBFlex
90 % 1 3 21366
70 % 1 3 19602
50 % 1 3 17020
40 % 1 3 15183
30 % 1 3 13028
Entity #2 | Chains: L
TP7 MAB protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42657
95 % 4 10 3689 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 31 148 144
70 % 897 2474 1
50 % 1832 5011 1
40 % 1832 5011 1
30 % 2087 5941 1
Entity #3 | Chains: H
TP7 MAB protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 42400
95 % 2 2 32234 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 2 30856
70 % 883 2424 2
50 % 1833 5011 1
40 % 1833 5011 1
30 % 2088 5941 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures