Sequence Similarity Clusters for the Entities in PDB 1BGX

Entity #1 | Chains: T
TAQ DNA POLYMERASE protein, length: 832 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30773
95 % 1 3 21370 Flexibility: High
Max RMSD: 32.7, Avg RMSD: 22.1
PDBFlex
90 % 1 3 20764
70 % 1 3 19068
50 % 1 3 16575
40 % 1 3 14800
30 % 1 3 12701
Entity #2 | Chains: L
TP7 MAB protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41449
95 % 4 10 3576 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.9
PDBFlex
90 % 31 146 143
70 % 843 2362 1
50 % 1723 4781 1
40 % 1723 4781 1
30 % 1931 5635 1
Entity #3 | Chains: H
TP7 MAB protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 41195
95 % 2 2 31390 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 2 30067
70 % 829 2311 2
50 % 1724 4781 1
40 % 1724 4781 1
30 % 1932 5635 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures