Sequence Similarity Clusters for the Entities in PDB 1BGB

Entity #1 | Chains: C,D
DNA (5'-D(*CP*GP*GP*GP*AP*TP*AP*TP*CP*CP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,B
ECORV ENDONUCLEASE protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 23 801
95 % 10 31 779 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 10 31 807
70 % 10 31 850
50 % 10 31 903
40 % 10 31 927
30 % 10 31 907

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.