Sequence Similarity Clusters for the Entities in PDB 1BFO

Entity #1 | Chains: A,C,E,G
CAMPATH-1G ANTIBODY protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 19047
95 % 1 1 19180 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 1 1 18673
70 % 1283 2519 1
50 % 2625 5107 1
40 % 3004 5756 1
30 % 3680 7175 1
Entity #2 | Chains: B,D,F,H
CAMPATH-1G ANTIBODY protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 17908
95 % 1 1 17409 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.9
PDBFlex
90 % 1 1 17001
70 % 1275 2478 2
50 % 2626 5107 1
40 % 3005 5756 1
30 % 3681 7175 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures