Sequence Similarity Clusters for the Entities in PDB 1BF4

Entity #1 | Chains: B
DNA (5'-D(*GP*CP*GP*TP*5IUP*CP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(*GP*CP*GP*AP*AP*CP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (CHROMOSOMAL PROTEIN SSO7D) protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 4 16932
95 % 2 8 8534 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 8 8465
70 % 4 26 2175
50 % 4 26 2182
40 % 4 26 2167
30 % 4 26 2041

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures