Sequence Similarity Clusters for the Entities in PDB 1BF4

Entity #1 | Chains: B
DNA (5'-D(*GP*CP*GP*TP*5IUP*CP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: C
DNA (5'-D(*GP*CP*GP*AP*AP*CP*GP*C)-3') dna, length: 8 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A
PROTEIN (CHROMOSOMAL PROTEIN SSO7D) protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 48571
95 % 2 8 8095 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.9
PDBFlex
90 % 2 8 8046
70 % 4 26 2056
50 % 4 26 2059
40 % 4 26 2060
30 % 4 26 1989

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.