Sequence Similarity Clusters for the Entities in PDB 1BE3

Entity #1 | Chains: A
CYTOCHROME BC1 COMPLEX protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 30 1138
95 % 18 33 1181 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 18 37 1011
70 % 24 54 616
50 % 24 54 661
40 % 24 54 701
30 % 31 62 605
Entity #10 | Chains: J
CYTOCHROME BC1 COMPLEX protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 34 893
95 % 18 36 1021 Flexibility: Low
Max RMSD: 11.4, Avg RMSD: 2.1
PDBFlex
90 % 18 36 1053
70 % 18 39 993
50 % 18 39 1029
40 % 18 39 1047
30 % 18 39 1031
Entity #11 | Chains: K
CYTOCHROME BC1 COMPLEX protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 11376
95 % 14 22 2091 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 14 22 2024
70 % 14 25 1667
50 % 14 25 1712
40 % 14 25 1698
30 % 14 25 1673
Entity #2 | Chains: B
CYTOCHROME BC1 COMPLEX protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 31 1139
95 % 18 34 1152 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 18 38 1051
70 % 24 55 613
50 % 24 55 659
40 % 24 55 699
30 % 24 55 700
Entity #3 | Chains: C
CYTOCHROME BC1 COMPLEX protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1140
95 % 18 29 1367 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 18 33 1139
70 % 24 53 617
50 % 31 61 567
40 % 38 69 462
30 % 38 69 472
Entity #4 | Chains: D
CYTOCHROME BC1 COMPLEX protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 26 1289
95 % 17 29 1400 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.1
PDBFlex
90 % 17 32 1238
70 % 23 46 730
50 % 30 54 670
40 % 36 61 521
30 % 36 61 517
Entity #5 | Chains: E
CYTOCHROME BC1 COMPLEX protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 25 1464
95 % 18 25 1726 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 18 31 1331
70 % 24 45 786
50 % 31 53 708
40 % 38 61 526
30 % 38 61 528
Entity #6 | Chains: F
CYTOCHROME BC1 COMPLEX protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1125
95 % 18 33 1097 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 18 36 1055
70 % 24 53 608
50 % 24 53 656
40 % 24 53 697
30 % 24 53 697
Entity #7 | Chains: G
CYTOCHROME BC1 COMPLEX protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 28 1158
95 % 18 33 1098 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 18 36 1050
70 % 18 39 990
50 % 24 53 650
40 % 24 53 693
30 % 24 53 695
Entity #8 | Chains: H
CYTOCHROME BC1 COMPLEX protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 1663
95 % 17 30 1315 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.9
PDBFlex
90 % 23 44 743
70 % 24 52 620
50 % 24 52 665
40 % 24 52 705
30 % 24 52 710
Entity #9 | Chains: I
CYTOCHROME BC1 COMPLEX protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 15 2985
95 % 13 16 2978 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 13 17 2662
70 % 13 17 2644
50 % 14 19 2311
40 % 14 19 2286
30 % 14 19 2147

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures