Sequence Similarity Clusters for the Entities in PDB 1BE3

Entity #1 | Chains: A
CYTOCHROME BC1 COMPLEX protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 30 1099
95 % 18 33 1142 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 18 37 988
70 % 24 54 592
50 % 24 54 634
40 % 24 54 673
30 % 31 62 600
Entity #10 | Chains: J
CYTOCHROME BC1 COMPLEX protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 34 870
95 % 18 36 997
90 % 18 36 1031
70 % 18 39 969
50 % 18 39 1008
40 % 18 39 1029
30 % 18 39 1016
Entity #11 | Chains: K
CYTOCHROME BC1 COMPLEX protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 11147
95 % 14 22 2039 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 14 22 1983
70 % 14 25 1617
50 % 14 25 1663
40 % 14 25 1653
30 % 14 25 1632
Entity #2 | Chains: B
CYTOCHROME BC1 COMPLEX protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 31 1100
95 % 18 34 1117 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 18 38 1029
70 % 24 55 590
50 % 24 55 632
40 % 24 55 671
30 % 24 55 672
Entity #3 | Chains: C
CYTOCHROME BC1 COMPLEX protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1101
95 % 18 29 1321 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 18 33 1108
70 % 24 53 593
50 % 31 61 557
40 % 38 69 451
30 % 38 69 464
Entity #4 | Chains: D
CYTOCHROME BC1 COMPLEX protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 26 1252
95 % 17 29 1356 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 17 32 1189
70 % 23 46 712
50 % 30 54 643
40 % 36 61 512
30 % 36 61 507
Entity #5 | Chains: E
CYTOCHROME BC1 COMPLEX protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 25 1408
95 % 18 25 1662 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 18 31 1286
70 % 24 45 762
50 % 31 53 692
40 % 38 61 518
30 % 38 61 519
Entity #6 | Chains: F
CYTOCHROME BC1 COMPLEX protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1086
95 % 18 33 1070 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 18 36 1033
70 % 24 53 588
50 % 24 53 630
40 % 24 53 670
30 % 24 53 670
Entity #7 | Chains: G
CYTOCHROME BC1 COMPLEX protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 28 1125
95 % 18 33 1071 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 18 36 1028
70 % 18 39 966
50 % 24 53 625
40 % 24 53 666
30 % 24 53 667
Entity #8 | Chains: H
CYTOCHROME BC1 COMPLEX protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 1612
95 % 17 30 1270 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 23 44 717
70 % 24 52 596
50 % 24 52 637
40 % 24 52 676
30 % 24 52 678
Entity #9 | Chains: I
CYTOCHROME BC1 COMPLEX protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 15 2922
95 % 13 16 2908 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 13 17 2595
70 % 13 17 2581
50 % 14 19 2264
40 % 14 19 2239
30 % 14 19 2106

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures