Sequence Similarity Clusters for the Entities in PDB 1BE3

Entity #1 | Chains: A
CYTOCHROME BC1 COMPLEX protein, length: 446 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 1253
95 % 17 29 1303 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 17 33 1092
70 % 23 50 645
50 % 23 50 692
40 % 23 50 725
30 % 30 58 609
Entity #10 | Chains: J
CYTOCHROME BC1 COMPLEX protein, length: 62 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 27 1025
95 % 17 32 1160
90 % 17 32 1187
70 % 23 49 662
50 % 23 49 707
40 % 23 49 737
30 % 23 49 734
Entity #11 | Chains: K
CYTOCHROME BC1 COMPLEX protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 11127
95 % 14 21 2194 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 14 22 2045
70 % 14 25 1607
50 % 14 25 1650
40 % 14 25 1668
30 % 14 25 1640
Entity #2 | Chains: B
CYTOCHROME BC1 COMPLEX protein, length: 439 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 25 1254
95 % 17 30 1304 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 17 34 1165
70 % 23 51 646
50 % 23 51 693
40 % 23 51 726
30 % 23 51 722
Entity #3 | Chains: C
CYTOCHROME BC1 COMPLEX protein, length: 379 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 25 1177
95 % 17 25 1586 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 17 29 1260
70 % 23 49 648
50 % 30 57 587
40 % 37 65 459
30 % 37 65 455
Entity #4 | Chains: D
CYTOCHROME BC1 COMPLEX protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 26 1059
95 % 17 29 1314 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.2
PDBFlex
90 % 17 32 1147
70 % 23 46 703
50 % 30 54 624
40 % 30 54 661
30 % 37 62 474
Entity #5 | Chains: E
CYTOCHROME BC1 COMPLEX protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 21 1688
95 % 17 24 1708 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.4
PDBFlex
90 % 17 30 1311
70 % 23 44 763
50 % 30 52 681
40 % 37 60 500
30 % 37 60 498
Entity #6 | Chains: F
CYTOCHROME BC1 COMPLEX protein, length: 110 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 15 22 1386
95 % 17 29 1242 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 17 32 1183
70 % 23 49 660
50 % 23 49 703
40 % 23 49 733
30 % 23 49 731
Entity #7 | Chains: G
CYTOCHROME BC1 COMPLEX protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 24 1243
95 % 17 29 1243 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 17 32 1186
70 % 17 35 1084
50 % 23 49 706
40 % 23 49 736
30 % 23 49 733
Entity #8 | Chains: H
CYTOCHROME BC1 COMPLEX protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 17 21 1655
95 % 17 30 1244 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.0
PDBFlex
90 % 23 44 713
70 % 23 48 670
50 % 23 48 715
40 % 23 48 745
30 % 23 48 743
Entity #9 | Chains: I
CYTOCHROME BC1 COMPLEX protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 15 2677
95 % 13 16 2941 Flexibility: Medium
Max RMSD: 8.3, Avg RMSD: 4.1
PDBFlex
90 % 13 17 2729
70 % 13 17 2717
50 % 14 19 2218
40 % 14 19 2212
30 % 14 19 2108

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures